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Update wrapper to latest nightly

This version includes the fix #9643.

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    /gradle/wrapper/gradle-wrapper.properties
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    /subprojects/docs/src/docs/release/notes.md
Publish 5.5-20190607012002+0000

Merge pull request #9597 from Godin/jacoco_documentation

Fix documentation: task "jacocoTestReport" doesn't depend on "test" task

Extract some common Kotlin build init logic into a separate class where it can be reused.

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    /subprojects/docs/src/docs/release/notes.md
Publish 5.5-20190606202909+0000

Merge branch 'release'

Ignore configuration deprecation warnings from the kotlin-gradle-plugin

Merge pull request #9644 from gradle/eskatos/ie/fixes

Let InstantExecution support Callable runtime input properties

Deprecate legacy Java plugin configurations

Do not declare dependencies on pure resolve/consume configurations

This updates some dependency management tests to not declare

dependencies on pure resolve/consume configurations

(i.e configurations with only one of canBeConsumed/canBeResolved

set to true)

This functionality is going to be deprecated.

Introduce 'annotationProcessorClasspath' configuration

Emit warnings if deprecated configurations are used

Add logging messages for deprecated configurations

Exclude deprecated configurations from reports

Merge pull request #9636 from gradle/jjohannes/no-compileOnly-module-deps

Prefer 'implementation' over 'compileOnly' dependencies in gradle/gradle build

Inline org.gradle.testing.internal.util.Specification

  1. … 39 more files in changeset.
Merge remote-tracking branch 'origin/release'

* origin/release:

Update sample of building a Gradle distribution

Link to sample of custom Gradle distribution

Remove unused/outdated customDistribution sample

Merge pull request #9623 from gradle/wolfs/no-manual-project-dir-cleanup

Do not clean up project cache dirs manually

Merge pull request #9622 from gradle/wolfs/fingerprinting/no-factory

Remove usage of Factory from DefaultFileSystemSnapshotter

Accept deprecation warnings in test with 3rd party plugins

Rework ClasspathManifest task so its state doesn't hold Project references

Signed-off-by: Paul Merlin <paul@gradle.com>

Unpack runtime input properties

Signed-off-by: Paul Merlin <paul@gradle.com>

Let BeanProperty(Reader|Writer) (un)pack Callables

Signed-off-by: Paul Merlin <paul@gradle.com>

Fix corner cases in graph resolution

The deferred selection still had a couple corner cases where the graph

was not in the right state. It was possible to leak selectors and/or

unattached dependencies.

Fixes #9641

Let BeanSchema ignore the `__meta_class__` field that Gradle generates

Signed-off-by: Paul Merlin <paul@gradle.com>

Adjust tests to use 'implementation' instead of 'compile'

Merge pull request #9186 from mig4/buildinit-use-kotlin-platform

Align versions of all Kotlin components in generated projects

Change 'compilOnly' to the more correct 'implementation'