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Removed the type directory from the artifact filestore layout.

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GRADLE-1974 eclipse wtp web libs container is always present for 'war' + 'eclipse-wtp' plugin combo.

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GRADLE-2079 use jar url in javadoc attribute - add fromJarURL() to FileReferenceFactory. - add getJarURL() to FileReference. - replaced FileReference.getPath references on javadoc attribute by FileReference.getJarURL. - removed jar urls with "in-jar" paths in test .classpath files as gradle doesn't the then generation of them.

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Revert "GRADLE-2079 fixed javadoc path handling:"

This reverts commit 710a0bade813a7af8553231de187b90a746c2bb4.

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GRADLE-2079 fixed javadoc path handling: - never use variables in javadoc paths -> its not supported by eclipse - replaced raw path to jar file by jar url (eg.jar:file:/path/to/jar.jar!/)

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Fix integration test for new cache path

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Update IDE integration tests for new cache layout

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Integration test fixes for new cache location and layout.

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Meaty check-in :/ Updated the package names to be consistent with the convention we have. Updated docs accordingly.

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    ./webAppWithVarsClasspath.xml
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