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Add Kotlin sample for userguide/javaLibraryDistribution

Signed-off-by: Paul Merlin <paul@gradle.com>

  1. … 15 more files in changeset.
Convert user manual to be generated by Asciidoctor only

This change replaces all embedded Docbook syntax from the user manual.

Asciidoctor files are now converted directly to HTML and PDF.

It not only greatly simplifies the user manual generation pipeline, but also it makes it faster.

I did the following for all user manual pages:

- [x] Adjusted links to other manual pages, DSL docs, and Javadocs where necessary.

Fixed a couple dozen broken links at least.

- [x] Convert samples XML from docbook to asciidoctor syntax

- [x] Converted wide tables to a more flexible list-based display

Important contributor differences from now on:

- Users must use a `<file>.adoc#` prefix for all cross-reference links.

This is _required_ to achieve working links in all 3 outputs: multi-page user manual, single-page user manual, and PDF.

- The manual PDF is no longer themed, and no longer has the list of examples links in the TOC.

- File names were changed from camelCased to snake_case to have a crystal clear 1-1 mapping between source to output.

- Section reference verification is now handled by Asciidoctor verbose mode.

- The single-page user manual has the same navigation as the multi-page manual for now.

- [Common Asciidoctor extensions](https://github.com/gradle/dotorg-docs/tree/master/docs-asciidoctor-extensions) are now used by Gradle Guides and the User Manual, however, the the web assets (CSS, JS, etc) are not yet merged.

These extensions are responsible for injecting the navigation and styles.

The header/footer/navigation HTML can now be found under `subprojects/docs/src/main/resources`.

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Upgrade Apache Commons Collections to v3.2.2

Version 3.2.1 has a CVSS 10.0 vulnerability. That's the worst kind of

vulnerability that exists. By merely existing on the classpath, this

library causes the Java serialization parser for the entire JVM process

to go from being a state machine to a turing machine. A turing machine

with an exec() function!

https://web.nvd.nist.gov/view/vuln/detail?vulnId=CVE-2015-8103

https://commons.apache.org/proper/commons-collections/security-reports.html

http://foxglovesecurity.com/2015/11/06/what-do-weblogic-websphere-jboss-jenkins-opennms-and-your-application-have-in-common-this-vulnerability/

  1. … 54 more files in changeset.
Fix merge problem.

fix ci failure: update userguide samples for distribution plugins; fix pmdExtension.

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Allow customisation of the distribution plugin

Test coverage

Allow distributions to be installed

Generate a TAR distribution

  1. … 13 more files in changeset.
fix indenting in sample build script.

Rename plugin jvm-library to java-library distribution; fix userguide sample; some cleanup.

  1. … 15 more files in changeset.