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Fixed some problems with samples tests after the changes in the implicit tasks and dependency insight task.

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Update userguide and samples with information about using from task / from task.outputs

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Turn on deprecation checking for integration tests by default: disabled in a few cases - use GradleDistributionExecuter.ignoreDeprecationWarnings() in cases where warnings are still emitted in tests - Ignore idea.ConfigurationHooksTest.triggersBeforeAndWhenConfigurationHooks, since this test fails due to a bug - A few other tests still failing

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Renamed subprojects/gradle-(.+) to subprojects/$1

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