withIntegrationTests

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update default library versions used in tests and samples

- JUnit -> 4.11

- Groovy -> 2.0.5

- Scala -> 2.9.2

- use short instead of long dependency notation

- eliminate usage of `scalaTools` configuration

  1. … 64 more files in changeset.
- Changed JavaBasePlugin to add a compile and runtime configuration for each source set. - Changed DependencyHandler so that a configuration can be used as the right-hand side of a dependency declaration. Simply a shortcut for extendsFrom(), but keeps all the dependencies grouped in one place. - Reworked some samples to simplify.

  1. … 17 more files in changeset.
Fixed the deprecation warnings in our own build. Deprecated sourceSet.xxx.classesDir in favor of sourceSet.xxx.output.classesDir (still pending fixing deprecation in the code itself).

  1. … 16 more files in changeset.
Updated to JUnit 4.8.2, TestNG 5.14.10, asm 3.3.1, commons-lang 2.6

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Renamed subprojects/gradle-(.+) to subprojects/$1

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    ./src/main/java/org/gradle/Person.java
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    ./src/test/java/org/gradle/PersonTestFixture.java
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