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Fix for -D command-line options with '=' in their value.

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GRADLE-1871 - when accepting unknown arguments on the CLI, don't try and parse each character as an option.

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Use the cli project within the wrapper to standardise argument parsing.

This includes:

• Extracting parsing of system properties into a standalone converter (used by wrapper and core)

• Changing the wrapper jar to be “fat” to include the classes from cli

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- Moved tests for cli classes from core to cli package. - Changed convention for the groovy projects (in the gradle build) so that groovy is not included as a compile or runtime dependency when the project does not have any groovy source directories.

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