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Take advantage of Kotlin DSL plugin spec builders

For they allow code navigation to the plugin implementation classes.

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Update Apache Commons libraries to latest versions

- Replace `IOUtils.closeQuietly()` with try-with-resources

- Add Charset parameter to `FileUtils.writeStringToFile`,

`FileUtils.readFileToString` and `IOUtils.write`

  1. … 12 more files in changeset.
Convert :build-options build script to Kotlin

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  1. … 2 more files in changeset.